PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136967.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 157aa    MW: 18729.7 Da    PI: 10.1111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000276100123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C  C++ +++ +++k+H+++  H
  XP_009136967.1  76 FYCDLCDYDYNSLDDFKKHLSRkeH 100
                     78******************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.94E-572103No hitNo description
PROSITE patternPS00028078100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MIISDRLGWR MSQSSLLQKS NYNCLLAYSV RPFVKPTLLT SAEWLWESLL AVSETKRHIL  60
QTCSGSEMVV ASTGMFYCDL CDYDYNSLDD FKKHLSRKEH TYEEHRMLSH SQSFPHRQRQ  120
FKISKYHDEV GYPPKTKRMR KAPRKCFLLR PLRFTRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136967.11e-116PREDICTED: uncharacterized protein LOC103861020
TrEMBLA0A078J7C82e-66A0A078J7C8_BRANA; BnaA03g58440D protein
TrEMBLA0A0D3DF025e-65A0A0D3DF02_BRAOL; Uncharacterized protein
STRINGBra012573.1-P4e-62(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103244